Structure of PDB 5w5y Chain Q

Receptor sequence
>5w5yQ (length=349) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
MFEVPITLTNRKFAQRRKLKYQYINYISRRFDRISKSDEERKFWKKYEKP
EKSFEIWRTVSSQNKQPINKQKMTYHNFKKIEKIPLRKMEIPLLHCTKEN
KLYFQSISRGLEPLKTSTSEVRNYRTRHIVTLTDLLHLNVSRHNWSLAYK
IFATLIRIPGVQIKSLWGIGVEILDNLSNSSSGLDFLQWMCQIYSSKSRF
VQNINYRSIVPPFQTGSRTHTAKFAITYLWSSLINCQKSMEPTENDLLQE
LIDKISEWVLTPPFMEDAEVWFIYASCHLLKADTLSRQFVNDNKNNDLIG
LDRDIKINQVIKHIHYVRTFLKICLDKGGFAVPSRLIENQLKSFESRLY
3D structure
PDB5w5y Structural mechanism of ATP-independent transcription initiation by RNA polymerase I.
ChainQ
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna Q R11 R125 C180 T181 K182 E183 N207 N287 R11 R41 C96 T97 K98 E99 N123 N203
BS02 dna Q S121 I288 N289 R291 S292 S37 I204 N205 R207 S208
Gene Ontology
Molecular Function
GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding
GO:0001181 RNA polymerase I general transcription initiation factor activity
GO:0005515 protein binding
GO:0017025 TBP-class protein binding
Biological Process
GO:0001188 RNA polymerase I preinitiation complex assembly
GO:0006361 transcription initiation at RNA polymerase I promoter
GO:0042790 nucleolar large rRNA transcription by RNA polymerase I
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0070860 RNA polymerase I core factor complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5w5y, PDBe:5w5y, PDBj:5w5y
PDBsum5w5y
PubMed28623663
UniProtQ04712|RRN11_YEAST RNA polymerase I-specific transcription initiation factor RRN11 (Gene Name=RRN11)

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