Structure of PDB 1utd Chain Q

Receptor sequence
>1utdQ (length=71) Species: 1422 (Geobacillus stearothermophilus) [Search protein sequence]
TNSDFVVIKALEDGVNVIGLTRGADTRFHHSEKLDKGEVLIAQFTEHTSA
IKVRGKAYIQTRHGVIESEGK
3D structure
PDB1utd The Interaction of RNA with Trap: The Role of Triplet Repeats and Separating Spacer Nucleotides
ChainQ
Resolution2.1 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Q G18 F32 E36 K37 D39 K56 G14 F28 E32 K33 D35 K52 PDBbind-CN: Kd=0.31nM
BS02 TRP Q T25 R26 G27 D29 T30 S53 T21 R22 G23 D25 T26 S49
BS03 TRP Q G23 H33 A46 Q47 T49 G19 H29 A42 Q43 T45
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
GO:0042802 identical protein binding
Biological Process
GO:0006353 DNA-templated transcription termination
GO:0006355 regulation of DNA-templated transcription

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:1utd, PDBe:1utd, PDBj:1utd
PDBsum1utd
PubMed15050822
UniProtQ9X6J6|MTRB_GEOSE Transcription attenuation protein MtrB (Gene Name=mtrB)

[Back to BioLiP]