Structure of PDB 5ndk Chain P8

Receptor sequence
>5ndkP8 (length=47) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence]
MKRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTPAVR
3D structure
PDB5ndk Aminoglycoside interactions and impacts on the eukaryotic ribosome.
ChainP8
Resolution2.95 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna P8 M1 K2 R3 T4 W5 Q6 P7 N8 R9 R10 K11 R12 H16 G17 F18 R19 R21 R23 G26 G27 R28 K29 V30 K32 R33 R34 R35 Q36 K37 G38 R39 W40 R41 M1 K2 R3 T4 W5 Q6 P7 N8 R9 R10 K11 R12 H16 G17 F18 R19 R21 R23 G26 G27 R28 K29 V30 K32 R33 R34 R35 Q36 K37 G38 R39 W40 R41
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:1990904 ribonucleoprotein complex

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External links
PDB RCSB:5ndk, PDBe:5ndk, PDBj:5ndk
PDBsum5ndk
PubMed29208708
UniProtP80340|RL34_THET8 Large ribosomal subunit protein bL34 (Gene Name=rpmH)

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