Structure of PDB 7oyb Chain P1

Receptor sequence

>7oybP1 (length=152) Species: 7955 (Danio rerio) [Search protein sequence]

VRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKANKYLKDV
IVKHQCVPFRRYNGGVGRCAQAKQHDWTQGRWPKKSAEFLLHMLKNAESN
AELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT
EK

3D structure

PDB

7oyb A molecular network of conserved factors keeps ribosomes dormant in the egg.

Chain

Resolution

2.4 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	P1	V2 R3 Y4 L6 K16 S17 R18 S20 R23 H25 F26 K27 N28 R30 Q34 K37 K43 K46 K54 R62 Y63 N64 G65 G66 V67 G68 R69 C70 A71 Q72 K74 Q75 W78 T79 Q80 R82 W83 P84 K85 K86 K96 N97 S100 N101 Q118 V119 K121 M125 R127 T129 Y130 R131 A132 H133 G134 R135 I136 N137 P138 Y139 M140 S141	V1 R2 Y3 L5 K15 S16 R17 S19 R22 H24 F25 K26 N27 R29 Q33 K36 K42 K45 K53 R61 Y62 N63 G64 G65 V66 G67 R68 C69 A70 Q71 K73 Q74 W77 T78 Q79 R81 W82 P83 K84 K85 K95 N96 S99 N100 Q117 V118 K120 M124 R126 T128 Y129 R130 A131 H132 G133 R134 I135 N136 P137 Y138 M139 S140
BS02	rna	P1	R3 S5 R30 R61 R62 W78 N120 K121 P123 H145	R2 S4 R29 R60 R61 W77 N119 K120 P122 H144

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:7oyb, PDBe:7oyb, PDBj:7oyb
PDBsum	7oyb
PubMed	36653451
UniProt	Q7T1K0

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