Structure of PDB 9fmd Chain P

Receptor sequence
>9fmdP (length=106) Species: 9606 (Homo sapiens) [Search protein sequence]
TTAARPTFEPARGGRGKGEGDLSQLSKQYSSRDLPSHTKIKYRQTTQDAP
EEVRNRDFRRELEERERAAAREKNRWDDDVVFKNCRFVNDTLRSEFHKKF
MEKYIK
3D structure
PDB9fmd Mechanism for the initiation of spliceosome disassembly.
ChainP
Resolution3.3 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna P A5 R6 P7 F9 A4 R5 P6 F8
BS02 rna P S32 R33 P36 S37 H38 T39 S31 R32 P35 S36 H37 T38
BS03 rna P T2 T3 A4 R6 T8 P11 A12 R33 D34 T1 T2 A3 R5 T7 P10 A11 R32 D33
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0045292 mRNA cis splicing, via spliceosome
Cellular Component
GO:0000974 Prp19 complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0005739 mitochondrion
GO:0016607 nuclear speck
GO:0071007 U2-type catalytic step 2 spliceosome
GO:0071013 catalytic step 2 spliceosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:9fmd, PDBe:9fmd, PDBj:9fmd
PDBsum9fmd
PubMed38925148
UniProtQ9P013|CWC15_HUMAN Spliceosome-associated protein CWC15 homolog (Gene Name=CWC15)

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