Structure of PDB 8r6c Chain P

Receptor sequence
>8r6cP (length=81) Species: 679895 (Escherichia coli BW25113) [Search protein sequence]
MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIASEKEEGT
RLDLDRIAHWVGQGATISDRVAALIKEVNKA
3D structure
PDB8r6c Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis.
ChainP
Resolution2.2 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna P M1 V2 R5 L6 R8 G10 K12 K13 R14 F16 Y17 Q18 D23 R25 R28 G30 R31 R35 F38 S44 E47 R51 W60 Q63 G64 S68 R70 M1 V2 R5 L6 R8 G10 K12 K13 R14 F16 Y17 Q18 D23 R25 R28 G30 R31 R35 F38 S44 E47 R51 W60 Q63 G64 S68 R70
Gene Ontology
Molecular Function
GO:0000400 four-way junction DNA binding
GO:0003735 structural constituent of ribosome
GO:0004519 endonuclease activity
GO:0004520 DNA endonuclease activity
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0002181 cytoplasmic translation
GO:0006259 DNA metabolic process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:8r6c, PDBe:8r6c, PDBj:8r6c
PDBsum8r6c
PubMed38826346
UniProtP0A7T3|RS16_ECOLI Small ribosomal subunit protein bS16 (Gene Name=rpsP)

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