Structure of PDB 6ogi Chain P

Receptor sequence
>6ogiP (length=116) Species: 562 (Escherichia coli) [Search protein sequence]
RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFA
AQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITD
VTPIPHNGCRPPKKRR
3D structure
PDB6ogi Extensive ribosome and RF2 rearrangements during translation termination.
ChainP
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna P H21 H23 N27 I30 T32 T34 G38 A40 W43 T45 G47 G48 G53 K56 P114 I115 P116 H117 N118 G119 C120 R121 P123 K124 K125 R126 R127 H10 H12 N16 I19 T21 T23 G27 A29 W32 T34 G36 G37 G42 K45 P103 I104 P105 H106 N107 G108 C109 R110 P112 K113 K114 R115 R116
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0070181 small ribosomal subunit rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6ogi, PDBe:6ogi, PDBj:6ogi
PDBsum6ogi
PubMed31513010
UniProtP0A7R9|RS11_ECOLI Small ribosomal subunit protein uS11 (Gene Name=rpsK)

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