Structure of PDB 5zeb Chain P

Receptor sequence

>5zebP (length=126) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence]

AHKPVGQNISEVRRNARLRRHARLRKKVAGTAEVPRLVVNRSARHIHVQL
VNDLNGTTLAAASSIEADVRAIDGDKKAHSVRVGQLIAERAKAAGVETVV
FDRGGYTYGGRIAALADAAREAGLKF

3D structure

PDB

5zeb Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA.

Chain

Resolution

3.4 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	P	H3 K4 P5 N9 I10 S11 E12 R14 R15 H22 R26 R37 N41 R42 S43 A44 R45 H46 Q50 V52 T59 I66 D76 K77 K78 T108 G111 R112	H2 K3 P4 N8 I9 S10 E11 R13 R14 H21 R25 R36 N40 R41 S42 A43 R44 H45 Q49 V51 T58 I65 D75 K76 K77 T107 G110 R111
BS02	rna	P	V6 R20 R21 R24 K27 F102 R104 Y109 R121 F127	V5 R19 R20 R23 K26 F101 R103 Y108 R120 F126

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links