Structure of PDB 5d4e Chain P

Receptor sequence
>5d4eP (length=346) Species: 262724 (Thermus thermophilus HB27) [Search protein sequence]
SDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLI
REVVRAKILGSARVRHIPGLKETLDPKTVEEIDQKLKSLPKEHKRYLHIA
REGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKF
EYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQ
LQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDS
FYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLID
GREHTLEEVGAFFGVTRERIRQIENKALRKLKYHESRTRKLRDFLD
3D structure
PDB5d4e The mechanism of RNA 5' capping with NAD(+), NADH and desphospho-CoA.
ChainP
Resolution3.08 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna P G322 S327 F332 G245 S250 F255
BS02 dna P D79 V81 R82 L85 G89 N191 R193 L194 K200 F209 F227 E228 R231 F233 K234 S236 T237 Y238 T240 W241 D2 V4 R5 L8 G12 N114 R116 L117 K123 F132 F150 E151 R154 F156 K157 S159 T160 Y161 T163 W164
BS03 MG P A292 G296 A215 G219
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003700 DNA-binding transcription factor activity
GO:0016987 sigma factor activity
GO:0046872 metal ion binding
Biological Process
GO:0006352 DNA-templated transcription initiation
GO:0006355 regulation of DNA-templated transcription
GO:0010468 regulation of gene expression
GO:2000142 regulation of DNA-templated transcription initiation
Cellular Component
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5d4e, PDBe:5d4e, PDBj:5d4e
PDBsum5d4e
PubMed27383794
UniProtQ5SKW1

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