Structure of PDB 5afi Chain P

Receptor sequence
>5afiP (length=114) Species: 562 (Escherichia coli) [Search protein sequence]
SNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIR
NRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLR
ERTGKAARIKERLN
3D structure
PDB5afi Structure of the E. coli ribosome-EF-Tu complex at <3 angstrom resolution by Cs-corrected cryo-EM.
ChainP
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna P R38 G104 K105 R108 L113 R38 G104 K105 R108 L113
BS02 rna P R20 R50 N51 R52 H55 R92 K93 A94 K95 Y97 Y98 R102 R20 R50 N51 R52 H55 R92 K93 A94 K95 Y97 Y98 R102
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:5afi, PDBe:5afi, PDBj:5afi
PDBsum5afi
PubMed25707802
UniProtP0A7K6|RL19_ECOLI Large ribosomal subunit protein bL19 (Gene Name=rplS)

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