Structure of PDB 8rjb Chain O

Receptor sequence

>8rjbO (length=199) Species: 9986 (Oryctolagus cuniculus)

QVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKY
LAFLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKV
FDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGWKYQAVTA
TLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKISKFTDVLKTHGLLV

3D structure

• PDB: 8rjb UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
• Chain: O
• Resolution: 2.69243 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	O	R12 G17 R18 A21 K25 L28 R37 S44 Y48 R49 K51 R59 K60 R61 M62 N63 N65 P66 S67 R68 P70 Y71 H72 F73 R74 R82 T83 R85 G86 M87 P89 H90 K91 K93 R94 Q96 F105 G107 I108 P109 P110 D113 K114 K115 K116 R117 V126 V127 R128 L129 K130 P131 R133 E144 V145 G146 K148 Y149 L156 K161 K163 A164 H167 Y168 R169 K171 K172 M175 R176 K179 K188 L201 V203	R8 G13 R14 A17 K21 L24 R33 S40 Y44 R45 K47 R55 K56 R57 M58 N59 N61 P62 S63 R64 P66 Y67 H68 F69 R70 R78 T79 R81 G82 M83 P85 H86 K87 K89 R90 Q92 F101 G103 I104 P105 P106 D109 K110 K111 K112 R113 V122 V123 R124 L125 K126 P127 R129 E140 V141 G142 K144 Y145 L152 K157 K159 A160 H163 Y164 R165 K167 K168 M171 R172 K175 K184 L197 V199

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 30 13:35:22 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8rjb', asym_id = 'O', title = 'UCSF ChimeraX: Meeting modern challenges in visualization and analysis.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8rjb', asym_id='O', title='UCSF ChimeraX: Meeting modern challenges in visualization and analysis.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412,0015934', uniprot = '', pdbid = '8rjb', asym_id = 'O'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0015934', uniprot='', pdbid='8rjb', asym_id='O')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>