Structure of PDB 8rdu Chain O

Receptor sequence

>8rduO (length=257) Species: 34078 (Scytonema hofmannii) [Search protein sequence]

EWLQAEIARLKGKSIVPLQQVKTLHDWLDGKRKARKSCRVVGESRTGKTV
ACDAYRYRHKPQQEAGRPPTVPVVYIRPHQKCGPKDLFKKITEYLKYRVT
KGTVSDFRDRTIEVLKGCGVEMLIIDEADRLKPETFADVRDIAEDLGIAV
VLVGTDRLDAVIKRDEQVLERFRAHLRFGKLSGEDFKNTVEMWEQMVLKL
PVSSNLKSKEMLRILTSATEGYIGRLDEILREAAIRSLSRGLKKIDKAVL
QEVAKEY

3D structure

PDB

8rdu Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.

Chain

Resolution

2.3 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	O	T121 V122	T103 V104
BS02	peptide	O	I33 D71 R74 Y75 K78 P79 Y112	I15 D53 R56 Y57 K60 P61 Y94
BS03	ATP	O	Q185 R189	Q167 R171
BS04	ATP	O	K31 S32 I33 V34 S62 R63 G65 K66 T67 V68 W211 G242 D245	K13 S14 I15 V16 S44 R45 G47 K48 T49 V50 W193 G224 D227

External links

PDB	RCSB:8rdu, PDBe:8rdu, PDBj:8rdu
PDBsum	8rdu
PubMed	38834066
UniProt	A0A8J0PCL3

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