Structure of PDB 8pj1 Chain O

Receptor sequence

>8pj1O (length=211) Species: 9606 (Homo sapiens) [Search protein sequence]

DPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKGRVFEVSLA
DLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIE
AHVDVKTTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIM
TREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPK
FELGKLMELHG

3D structure

PDB

8pj1 Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining

Chain

Resolution

3.4 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	O	P24 V66 H101 V114 K115 K116 W117 Q118 M120 H124 R136 F138 R146 N148 Q149 I150 R151 Y155 Q157 H158 Q159 Q160 R162 R165 K199 Q202 S203 I204 Y205 P206 K216	P2 V44 H79 V92 K93 K94 W95 Q96 M98 H102 R114 F116 R124 N126 Q127 I128 R129 Y133 Q135 H136 Q137 Q138 R140 R143 K177 Q180 S181 I182 Y183 P184 K194

External links

PDB	RCSB:8pj1, PDBe:8pj1, PDBj:8pj1
PDBsum	8pj1
PubMed
UniProt	P61247\|RS3A_HUMAN Small ribosomal subunit protein eS1 (Gene Name=RPS3A)

[Back to BioLiP]