Structure of PDB 8ov5 Chain O

Receptor sequence

>8ov5O (length=312) Species: 2961 (Amphidinium carterae) [Search protein sequence]

DEIGDAAKKLGDASYAFAKEVDWNNGIFLQAPGKLQPLEALKAIDKMIVM
GAAADPKLLKAAAEAHHKAIGSVSGPNGVTSRADWDNVNAALGRVIASVP
ENMVMDVYDSVSKITDPKVPAYMKSLVNGADAEKAYEGFLAFKDVVKKSQ
VTSAAGPATVPSGDKIGVAAQQLSEASYPFLKEIDWLSDVYMKPLPGVSA
QQSLKAIDKMIVMGAQADGNALKAAAEAHHKAIGSIDATGVTSAADYAAV
NAALGRVIASVPKSTVMDVYNAMAGVTDTSIPLNMFSKVNPLDANAAAKA
FYTFKDVVQAAQ

3D structure

PDB

8ov5 Structural and Spectroscopic Characterization of the Peridinin-Chlorophyll a-Protein (PCP) Complex from Heterocapsa pygmaea (HPPCP)

Chain

Resolution

1.15 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	W4I	O	D22 N24 N25	D22 N24 N25
BS02	CLA	O	F17 A62 H66 F139 I211	F17 A62 H66 F139 I211
BS03	CLA	O	I48 F180 A225 H229 Y247 L254 F301	I48 F180 A225 H229 Y247 L254 F301
BS04	PID	O	F17 W23 F28 P120 A121 M123 K124 Y136	F17 W23 F28 P120 A121 M123 K124 Y136
BS05	PID	O	I27 F28 P32 K118 V119 Y122 I207 M210	I27 F28 P32 K118 V119 Y122 I207 M210
BS06	PID	O	M47 M50 V107 Y108 L222 A226	M47 M50 V107 Y108 L222 A226
BS07	PID	O	W23 V73 G78 V79 T80 W85 N89 L92 E101 V104 F139 K143 Q150 Q201 L204	W23 V73 G78 V79 T80 W85 N89 L92 E101 V104 F139 K143 Q150 Q201 L204
BS08	W4I	O	Y108 V111 S112 P120	Y108 V111 S112 P120
BS09	PID	O	L35 A40 F180 I184 W186 Y191 M192 P282 M285 F286 A298	L35 A40 F180 I184 W186 Y191 M192 P282 M285 F286 A298
BS10	PID	O	V190 Y191 I281 N284 M285	V190 Y191 I281 N284 M285
BS11	PID	O	L59 M210 G214 Y270 Y302	L59 M210 G214 Y270 Y302
BS12	PID	O	W186 I233 G240 V241 T242 N251 L254 I258 V266 F301 K305 V308 Q309 Q312	W186 I233 G240 V241 T242 N251 L254 I258 V266 F301 K305 V308 Q309 Q312
BS13	W4I	O	M210 Y270 M273 P282 Y302	M210 Y270 M273 P282 Y302

Gene Ontology

	Molecular Function
GO:0016168	chlorophyll binding

	Cellular Component
GO:0030076	light-harvesting complex

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Molecular Function

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Cellular Component

External links

PDB	RCSB:8ov5, PDBe:8ov5, PDBj:8ov5
PDBsum	8ov5
PubMed
UniProt	P80484\|PCP1_AMPCA Peridinin-chlorophyll a-binding protein 1, chloroplastic

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