Structure of PDB 6spd Chain O

Receptor sequence
>6spdO (length=115) Species: 287 (Pseudomonas aeruginosa) [Search protein sequence]
SVKKETRLRRARKARLKMRELETVRLCVYRSSQHIYAQVIAADGGKVLAS
ASTLDKDLREGATGNIDAAKKVGQLVAERAKAAGVTQVAFDRSGFKYHGR
VKALADAAREGGLEF
3D structure
PDB6spd Structure ofPseudomonas aeruginosaribosomes from an aminoglycoside-resistant clinical isolate.
ChainO
Resolution3.28 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna O R10 R13 K18 F91 R93 Y98 R110 R9 R12 K17 F90 R92 Y97 R109
BS02 rna O K4 R31 S32 Q34 H35 I41 G45 G46 K47 D56 K57 N66 I67 H99 G100 R101 K3 R30 S31 Q33 H34 I40 G44 G45 K46 D55 K56 N65 I66 H98 G99 R100
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:6spd, PDBe:6spd, PDBj:6spd
PDBsum6spd
PubMed31611393
UniProtE2RXU0

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