Structure of PDB 6q97 Chain O

Receptor sequence
>6q97O (length=115) Species: 562 (Escherichia coli) [Search protein sequence]
KKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAAS
TVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR
VQALADAAREAGLQF
3D structure
PDB6q97 How a circularized tmRNA moves through the ribosome.
ChainO
Resolution3.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna O R9 R10 K17 S91 F92 R94 Y99 F117 R7 R8 K15 S89 F90 R92 Y97 F115
BS02 rna O K3 R15 R25 H29 R30 T31 R33 H34 Y36 Q38 G44 S45 E46 V47 V54 E55 K56 Y64 N67 K68 H100 G101 R102 K1 R13 R23 H27 R28 T29 R31 H32 Y34 Q36 G42 S43 E44 V45 V52 E53 K54 Y62 N65 K66 H98 G99 R100
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:6q97, PDBe:6q97, PDBj:6q97
PDBsum6q97
PubMed30765567
UniProtP0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)

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