Structure of PDB 6p5j Chain O

Receptor sequence

>6p5jO (length=149) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIG
VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKH
LERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALV

3D structure

PDB

6p5j The Israeli acute paralysis virus IRES captures host ribosomes by mimicking a ribosomal state with hybrid tRNAs.

Chain

Resolution

3.1 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	O	G2 R3 M4 H5 P7 G8 K9 G10 L11 S12 Q13 S14 A15 L16 P17 S48 Q49 G51 V52 A61 R64 F65 K70 L72 R73 K76 D87 H90 L91 K94 A97 H101 N105 K107 D108 K109 D110 K112 F113 R114 I116 L117 S120 R121 R124 R127 Y128	G1 R2 M3 H4 P6 G7 K8 G9 L10 S11 Q12 S13 A14 L15 P16 S47 Q48 G50 V51 A60 R63 F64 K69 L71 R72 K75 D86 H89 L90 K93 A96 H100 N104 K106 D107 K108 D109 K111 F112 R113 I115 L116 S119 R120 R123 R126 Y127

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0070181	small ribosomal subunit rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6p5j, PDBe:6p5j, PDBj:6p5j
PDBsum	6p5j
PubMed	31609474
UniProt	G1SP51\|RS13_RABIT Small ribosomal subunit protein uS15 (Gene Name=RPS13)

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