Structure of PDB 6gwt Chain O

Receptor sequence
>6gwtO (length=116) Species: 562 (Escherichia coli) [Search protein sequence]
DKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAA
STVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHG
RVQALADAAREAGLQF
3D structure
PDB6gwt Visualization of translation termination intermediates trapped by the Apidaecin 137 peptide during RF3-mediated recycling of RF1.
ChainO
Resolution3.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna O R9 R10 T12 R13 K17 L21 F92 R94 Y99 R8 R9 T11 R12 K16 L20 F91 R93 Y98
BS02 rna O K3 K4 R15 R25 H29 R30 T31 R33 H34 Q38 I40 G44 V47 V54 E55 Y64 N67 K68 F97 H100 G101 R102 K2 K3 R14 R24 H28 R29 T30 R32 H33 Q37 I39 G43 V46 V53 E54 Y63 N66 K67 F96 H99 G100 R101
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:6gwt, PDBe:6gwt, PDBj:6gwt
PDBsum6gwt
PubMed30076302
UniProtP0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)

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