Structure of PDB 5opt Chain O

Receptor sequence
>5optO (length=190) Species: 353153 (Trypanosoma cruzi strain CL Brener) [Search protein sequence]
MSAKAPKLFNKWSYENLQTTEIALSDHISKTATYVPHSAGRWQKKRFRKA
RIPIVERLTNGLMFKGRGNGKKLQAVRLVKHTLEIIHLLTDQNPLQVVID
AVSKGAPREDSTRVGSGGVVRRQAVDVSPMRRVNEAIYLMCKGAREAAFR
NLKTLPECLADEIVNASKGSSNSYAIKKKDEVERVAKANR
3D structure
PDB5opt The cryo-EM Structure of a Novel 40S Kinetoplastid-Specific Ribosomal Protein.
ChainO
Resolution4.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna O G40 R41 W42 Q43 K45 R46 K49 N60 M63 F64 K65 R67 G68 N69 G70 K72 Q74 R77 R131 N134 Y138 A148 F149 R150 N151 L152 K153 L155 G40 R41 W42 Q43 K45 R46 K49 N60 M63 F64 K65 R67 G68 N69 G70 K72 Q74 R77 R131 N134 Y138 A148 F149 R150 N151 L152 K153 L155
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5opt, PDBe:5opt, PDBj:5opt
PDBsum5opt
PubMed29107485
UniProtQ4E0Q3

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