Structure of PDB 5lzd Chain O

Receptor sequence
>5lzdO (length=116) Species: 562 (Escherichia coli) [Search protein sequence]
DKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAA
STVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHG
RVQALADAAREAGLQF
3D structure
PDB5lzd The pathway to GTPase activation of elongation factor SelB on the ribosome.
ChainO
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna O R9 R10 T12 R13 R16 K17 S91 F92 R94 Y99 F117 R8 R9 T11 R12 R15 K16 S90 F91 R93 Y98 F116
BS02 rna O K3 R15 R25 H29 R30 T31 R33 H34 I40 G44 S45 V47 E55 K56 Y64 N67 K68 H100 G101 R102 K2 R14 R24 H28 R29 T30 R32 H33 I39 G43 S44 V46 E54 K55 Y63 N66 K67 H99 G100 R101
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:5lzd, PDBe:5lzd, PDBj:5lzd
PDBsum5lzd
PubMed27842381
UniProtP0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)

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