Structure of PDB 5aka Chain O

Receptor sequence
>5akaO (length=117) Species: 83333 (Escherichia coli K-12) [Search protein sequence]
MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVA
ASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYH
GRVQALADAAREAGLQF
3D structure
PDB5aka Ribosome-Srp-Ftsy Cotranslational Targeting Complex in the Closed State.
ChainO
Resolution5.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna O M1 K3 R25 V27 H29 R30 T31 H34 Y36 Q38 E46 V47 V49 E55 N67 K68 R94 H100 G101 R102 M1 K3 R25 V27 H29 R30 T31 H34 Y36 Q38 E46 V47 V49 E55 N67 K68 R94 H100 G101 R102
BS02 rna O K4 R7 I8 R9 T12 R13 R16 Q19 E20 F92 Y99 K4 R7 I8 R9 T12 R13 R16 Q19 E20 F92 Y99
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:5aka, PDBe:5aka, PDBj:5aka
PDBsum5aka
PubMed25775537
UniProtP0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)

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