Structure of PDB 4d61 Chain O

Receptor sequence
>4d61O (length=137) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]
ISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKA
DRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQS
ALRALARSGMKIGRIEDVTPIPSDSTRRKGGRRGRRL
3D structure
PDB4d61 Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires.
ChainO
Resolution9.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna O N38 D39 F41 G49 K50 E51 T52 R55 T57 G59 M60 D65 R66 E68 R98 N103 P134 I135 P136 S137 D138 S139 T140 R141 G144 R146 R149 R150 N24 D25 F27 G35 K36 E37 T38 R41 T43 G45 M46 D51 R52 E54 R84 N89 P120 I121 P122 S123 D124 S125 T126 R127 G130 R132 R135 R136
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006412 translation
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4d61, PDBe:4d61, PDBj:4d61
PDBsum4d61
PubMed25601755
UniProtG1T1F0|RS14_RABIT Small ribosomal subunit protein uS11 (Gene Name=RPS14)

[Back to BioLiP]