Structure of PDB 3hhz Chain O

Receptor sequence
>3hhzO (length=421) Species: 11277 (Vesicular stomatitis Indiana virus) [Search protein sequence]
SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDL
RGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDT
IGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPE
YRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMF
FHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILN
REVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWG
QLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVG
DNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAV
MSLQGLREKTIGKYAKSEFDK
3D structure
PDB3hhz Structure of the vesicular stomatitis virus nucleocapsid in complex with the nucleocapsid-binding domain of the small polymerase cofactor, P.
ChainO
Resolution3.5 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna O R143 M149 E151 K154 K155 R214 Y215 D224 A226 K286 S287 S290 S291 V292 R312 R317 R408 R142 M148 E150 K153 K154 R213 Y214 D223 A225 K285 S286 S289 S290 V291 R311 R316 R407
Gene Ontology
Cellular Component
GO:0019013 viral nucleocapsid
GO:0019029 helical viral capsid
GO:0030430 host cell cytoplasm
GO:1990904 ribonucleoprotein complex

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Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:3hhz, PDBe:3hhz, PDBj:3hhz
PDBsum3hhz
PubMed19571006
UniProtQ77E03|NCAP_VSIVN Nucleoprotein (Gene Name=N)

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