Structure of PDB 8ro1 Chain N

Receptor sequence

>8ro1N (length=142) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

KLRRVRKSPPEGWDLIEPTLEQFEAKMREAETEPHEGKRKTEINWPIFRI
HHQRSRYVYDMYYKKAEISRELYEFCLTAKFADAALIAKWKKQGYENLCC
VKCVNTRDSNFGTACICRVPKSKLDAERVIECVHCGCHGCSG

3D structure

PDB

8ro1 Mechanism for the initiation of spliceosome disassembly.

Chain

Resolution

3.0 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	N	R75 A93 K96 K97	R70 A88 K91 K92
BS02	rna	N	K45 Q98 G99 E101 S114 N115 T118 A119 C120 I121 R123 V124 P125 K128 L129 C137 V138 H139 S146 G147	K40 Q93 G94 E96 S109 N110 T113 A114 C115 I116 R118 V119 P120 K123 L124 C132 V133 H134 S141 G142
BS03	ZN	N	C108 C120 C122 C137	C103 C115 C117 C132
BS04	ZN	N	C104 C105 C108 C140	C99 C100 C103 C135
BS05	ZN	N	C104 C122 C142 C145	C99 C117 C137 C140

External links

PDB	RCSB:8ro1, PDBe:8ro1, PDBj:8ro1
PDBsum	8ro1
PubMed	38925148
UniProt	P34313\|BUD31_CAEEL Protein BUD31 homolog (Gene Name=bud-31)