Structure of PDB 8ro0 Chain N

Receptor sequence

>8ro0N (length=142) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]

KLRRVRKSPPEGWDLIEPTLEQFEAKMREAETEPHEGKRKTEINWPIFRI
HHQRSRYVYDMYYKKAEISRELYEFCLTAKFADAALIAKWKKQGYENLCC
VKCVNTRDSNFGTACICRVPKSKLDAERVIECVHCGCHGCSG

3D structure

PDB

8ro0 Mechanism for the initiation of spliceosome disassembly.

Chain

Resolution

2.9 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	N	A93 K94 K96 K97	A88 K89 K91 K92
BS02	rna	N	G42 K43 R44 K45 T46 Q98 G99 E101 N102 N115 T118 A119 I121 R123 V124 P125 K128 V138 H139 S146 G147	G37 K38 R39 K40 T41 Q93 G94 E96 N97 N110 T113 A114 I116 R118 V119 P120 K123 V133 H134 S141 G142
BS03	ZN	N	C108 C120 C122 C137	C103 C115 C117 C132
BS04	ZN	N	C104 C108	C99 C103
BS05	ZN	N	C122 C142 C145	C117 C137 C140

External links

PDB	RCSB:8ro0, PDBe:8ro0, PDBj:8ro0
PDBsum	8ro0
PubMed	38925148
UniProt	P34313\|BUD31_CAEEL Protein BUD31 homolog (Gene Name=bud-31)