Structure of PDB 8rdu Chain N

Receptor sequence

>8rduN (length=257) Species: 34078 (Scytonema hofmannii) [Search protein sequence]

EWLQAEIARLKGKSIVPLQQVKTLHDWLDGKRKARKSCRVVGESRTGKTV
ACDAYRYRHKPQQEAGRPPTVPVVYIRPHQKCGPKDLFKKITEYLKYRVT
KGTVSDFRDRTIEVLKGCGVEMLIIDEADRLKPETFADVRDIAEDLGIAV
VLVGTDRLDAVIKRDEQVLERFRAHLRFGKLSGEDFKNTVEMWEQMVLKL
PVSSNLKSKEMLRILTSATEGYIGRLDEILREAAIRSLSRGLKKIDKAVL
QEVAKEY

3D structure

PDB

8rdu Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.

Chain

Resolution

2.3 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	dna	N	K103 T121 V122	K85 T103 V104
BS02	peptide	N	K31 I33 P35 R74 Y75 K78 P79 M214	K13 I15 P17 R56 Y57 K60 P61 M196
BS03	ATP	N	Q185 R189	Q167 R171
BS04	ATP	N	K31 S32 I33 V34 S62 R63 T64 G65 K66 T67 V68 W211 G242 D245	K13 S14 I15 V16 S44 R45 T46 G47 K48 T49 V50 W193 G224 D227

External links

PDB	RCSB:8rdu, PDBe:8rdu, PDBj:8rdu
PDBsum	8rdu
PubMed	38834066
UniProt	A0A8J0PCL3

[Back to BioLiP]