Structure of PDB 8jdj Chain N

Receptor sequence

>8jdjN (length=190) Species: 9606 (Homo sapiens) [Search protein sequence]

MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGK
KKKRLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFP
INVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGND
IELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVQQA

3D structure

PDB

8jdj Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.

Chain

Resolution

2.5 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	N	G22 R23 H40 N42 V43 K50 K51 W60 R64 K65 A68 R71 T72 S75 H76 N79 H98 F99 E120 K121 Y122 E152 S155 Q163 K170 D171 R173 K174 F175	G22 R23 H40 N42 V43 K50 K51 W60 R64 K65 A68 R71 T72 S75 H76 N79 H98 F99 E120 K121 Y122 E152 S155 Q163 K170 D171 R173 K174 F175
BS02	MG	N	T165 D177 Y180	T165 D177 Y180

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0019843	rRNA binding

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0005925	focal adhesion
GO:0016020	membrane
GO:0022625	cytosolic large ribosomal subunit
GO:0022626	cytosolic ribosome
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:8jdj, PDBe:8jdj, PDBj:8jdj
PDBsum	8jdj
PubMed	37992713
UniProt	P32969\|RL9_HUMAN Large ribosomal subunit protein uL6 (Gene Name=RPL9)

[Back to BioLiP]