Structure of PDB 8ffi Chain N

Receptor sequence

>8ffiN (length=469) Species: 429344 (Maribacter polysiphoniae) [Search protein sequence]

MKELIYIEEPKILFAHGQKCTDARDGLALFGPLNNLYGIKSGVIGTKQGL
KIFRDYLDHIQKPIYNSNSITRPMFPGFEAVFDCKWESTGITFKEVTNED
IGKFLYNSSTHKRTYDLVSLFIDKIISANKNEDENVDVWFVIVPDEIYKY
CRPNSVLPAETYNYDAQFHDQFKARLLKHTIPTQIFRESTLAWRDFKNAF
GLPIRDFSKIEGHLAWTISTAAFYKAGGKPWKLSDVRNGVCYLGLVYKKV
EKSKNPRNACCAAQMFLDNGDGTVFKGEVGPWYNPKNGQYHLEPKEAKAL
LSQSLQSYKEQIGEYPKEVFIHAKTRFNHQEWDAFLEVTPKETNLVGVTI
SKTKPLKLYKTEGDYTILRGNAYVVNERSAFLWTVGYVPKIQTALSMEVP
NPLFIEINKGEADIKQVLKDILSLTKLNYNACIFADGEPVTLRFADKIGE
ILTASTDIKTPPLAFKYYI

3D structure

PDB

8ffi Oligomerization-mediated activation of a short prokaryotic Argonaute.

Chain

Resolution

2.7 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	N	Y148 Q205 H207 K211 F224 R225 T228 F245 H251 L252 T255 N325 N468 G475 R481 I507	Y148 Q167 H169 K173 F186 R187 T190 F207 H213 L214 T217 N287 N430 G437 R443 I469
BS02	dna	N	R72 N154 K247 K286 K287 Y328 T363 R364	R72 N154 K209 K248 K249 Y290 T325 R326
BS03	MG	N	N468 I507	N430 I469

Gene Ontology

	Molecular Function
GO:0003676	nucleic acid binding

View graph for
Molecular Function

External links

PDB	RCSB:8ffi, PDBe:8ffi, PDBj:8ffi
PDBsum	8ffi
PubMed	37494956
UniProt	A0A316E3U6

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