Structure of PDB 7pip Chain N

Receptor sequence

>7pipN (length=83) Species: 272634 (Mycoplasmoides pneumoniae M129)

QIDKNGIIKSAQLHDKDVGSIQVQVSLLTSQIKQLTDHLLANKKDFISKR
GLYAKVSKRKRLLKYLKHNDLEAYRNLVKTLNL

3D structure

• PDB: 7pip Visualizing translation dynamics at atomic detail inside a bacterial cell.
• Chain: N
• Resolution: 9.3 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	N	L53 L84	L52 L83
BS02	rna	N	Q2 I3 K5 N6 K17 D18 V19 G20 S21 Q25 H39 N43 K44 K45 D46 F47 I48 K50 R51 Y54 A55 S58 R62 L63 K65 Y66	Q1 I2 K4 N5 K16 D17 V18 G19 S20 Q24 H38 N42 K43 K44 D45 F46 I47 K49 R50 Y53 A54 S57 R61 L62 K64 Y65

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022627 cytosolic small ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7pip, PDBe:7pip, PDBj:7pip
• PDBsum: 7pip
• PubMed: 36171285
• UniProt: P75173|RS15_MYCPN Small ribosomal subunit protein uS15 (Gene Name=rpsO)