Structure of PDB 6r7q Chain N

Receptor sequence

>6r7qN (length=203) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

GAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRL
GYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSV
AEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWI
TKPVHKHREMRGLTSAGRKSRGLGKGHKFHHTIGGSRRAAWRRRNTLQLH
RYR

3D structure

PDB

6r7q Structural and mutational analysis of the ribosome-arresting human XBP1u.

Chain

Resolution

3.9 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	N	G2 Y4 K5 Q8 R12 K14 Q15 R24 R31 P40 R41 R44 K47 R49 R50 L51 K54 A55 K56 Q57 R67 R68 G69 G70 R71 R73 P74 P76 K77 Y81 G82 K83 P84 V85 H86 H87 N90 Q91 K93 F94 A95 R96 S97 L98 E104 R105 R108 A112 W120 D124 S125 Y127 F138 K140 R144 W150 P154 K157 H158 M161 R162 L164 S166 R169 K170 S171 R172 L174 K176 G177 H178 K179 H181 H182 G185 G186 S187 R189 W192 R193 R194 R195 H201 R202 Y203 R204	G1 Y3 K4 Q7 R11 K13 Q14 R23 R30 P39 R40 R43 K46 R48 R49 L50 K53 A54 K55 Q56 R66 R67 G68 G69 R70 R72 P73 P75 K76 Y80 G81 K82 P83 V84 H85 H86 N89 Q90 K92 F93 A94 R95 S96 L97 E103 R104 R107 A111 W119 D123 S124 Y126 F137 K139 R143 W149 P153 K156 H157 M160 R161 L163 S165 R168 K169 S170 R171 L173 K175 G176 H177 K178 H180 H181 G184 G185 S186 R188 W191 R192 R193 R194 H200 R201 Y202 R203
BS02	rna	N	R38 Q57 V60 Y62 H109 L113 D136 H139	R37 Q56 V59 Y61 H108 L112 D135 H138

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:0022626	cytosolic ribosome
GO:0044391	ribosomal subunit
GO:1990904	ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:6r7q, PDBe:6r7q, PDBj:6r7q
PDBsum	6r7q
PubMed	31246176
UniProt	G1T0C1\|RL15_RABIT Large ribosomal subunit protein eL15 (Gene Name=RPL15)

[Back to BioLiP]