Structure of PDB 6jnn Chain N

Receptor sequence
>6jnnN (length=89) Species: 3702 (Arabidopsis thaliana) [Search protein sequence]
RNICPIKGCGKNFFSHKYLVQHQRVHSDDRPLKCPWKGCKMTFKWAWSRT
EHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRKTGHS
3D structure
PDB6jnn DNA methylation repels targeting of Arabidopsis REF6.
ChainN
Resolution2.6 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 1.14.11.-
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna N F1277 F1278 Y1282 H1286 V1289 S1312 H1316 F1339 F13 F14 Y18 H22 V25 S48 H52 F75 PDBbind-CN: Kd=65.7nM
BS02 dna N W1311 V1340 S1341 S1344 R1348 W47 V76 S77 S80 R84 PDBbind-CN: Kd=65.7nM
BS03 ZN N C1298 C1303 H1316 H1320 C34 C39 H52 H56
BS04 ZN N C1328 C1333 H1346 H1352 C64 C69 H82 H88
External links
PDB RCSB:6jnn, PDBe:6jnn, PDBj:6jnn
PDBsum6jnn
PubMed31048693
UniProtQ9STM3|REF6_ARATH Lysine-specific demethylase REF6 (Gene Name=REF6)

[Back to BioLiP]