Structure of PDB 5z56 Chain N

Receptor sequence
>5z56N (length=143) Species: 9606 (Homo sapiens) [Search protein sequence]
MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIF
RIHHQKTRYIFDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENL
CCLRCIQTRDTNFGTNCICRVPKSKLEVGRIIECTHCGCRGCS
3D structure
PDB5z56 Structure of the human activated spliceosome in three conformational states.
ChainN
Resolution5.1 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna N G39 R41 K42 Q95 E98 N99 T111 N112 T115 N116 C117 I118 R120 V121 P122 K125 L126 T135 H136 S143 G39 R41 K42 Q95 E98 N99 T111 N112 T115 N116 C117 I118 R120 V121 P122 K125 L126 T135 H136 S143
BS02 ZN N C105 C119 C134 C105 C119 C134
BS03 ZN N C101 C137 C101 C137
BS04 ZN N C119 C139 C119 C139
Gene Ontology
Molecular Function
GO:0005515 protein binding
GO:0016922 nuclear receptor binding
GO:0030374 nuclear receptor coactivator activity
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
GO:0045893 positive regulation of DNA-templated transcription
GO:2000825 positive regulation of androgen receptor activity
Cellular Component
GO:0000785 chromatin
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005681 spliceosomal complex
GO:0071007 U2-type catalytic step 2 spliceosome

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5z56, PDBe:5z56, PDBj:5z56
PDBsum5z56
PubMed29360106
UniProtP41223|BUD31_HUMAN Protein BUD31 homolog (Gene Name=BUD31)

[Back to BioLiP]