Structure of PDB 5xnm Chain N

Receptor sequence

>5xnmN (length=219) Species: 3888 (Pisum sativum) [Search protein sequence]

GSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNR
ELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDY
LGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFD
PLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADH
LSDPVNNNAWSYATNFVPG

3D structure

PDB

5xnm Structure and assembly mechanism of plant C2S2M2-type PSII-LHCII supercomplex

Chain

Resolution

3.2 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	CLA	N	A49 L51	A37 L39
BS02	CHL	N	W222 A225 F228	W210 A213 F216
BS03	CHL	N	W46 T48	W34 T36
BS04	CHL	N	V22 K23 Y24 L25 G26 P27 F28 W46	V10 K11 Y12 L13 G14 P15 F16 W34
BS05	CLA	N	G42 D43 Y44 W46 L51 S52 N61 R62 E65 R185 M188 F189 F192	G30 D31 Y32 W34 L39 S40 N49 R50 E53 R173 M176 F177 F180
BS06	CLA	N	L64 H68 F195	L52 H56 F183
BS07	CLA	N	L74 L77 G78 F81 P82 Q103 L110 Y112 L113	L62 L65 G66 F69 P70 Q91 L98 Y100 L101
BS08	CHL	N	S117 V119 H120 A121 Q122 S123	S105 V107 H108 A109 Q110 S111
BS09	CHL	N	W71 G101 L110 V119 I127 Q131	W59 G89 L98 V107 I115 Q119
BS10	CHL	N	F98 K99 G101 S102 Q131	F86 K87 G89 S90 Q119
BS11	CHL	N	R70 W71 V138 Y141 R142 G146 P147 L148 G149 E150 P157 S160 F161 P163	R58 W59 V126 Y129 R130 G134 P135 L136 G137 E138 P145 S148 F149 P151
BS12	CHL	N	L64 I67 H68 W71 Q131 G136 E139 R142 I143	L52 I55 H56 W59 Q119 G124 E127 R130 I131
BS13	CLA	N	R70 M73 Y156 P157 G158 F161 L166 F173 L176 K177 K179 E180	R58 M61 Y144 P145 G146 F149 L154 F161 L164 K165 K167 E168
BS14	CLA	N	W16 K179 K182 N183	W4 K167 K170 N171
BS15	CLA	N	K179 N183 L186	K167 N171 L174
BS16	CLA	N	F189 G193 V196 Q197 V200 T201 H212 N220 A221 Y224	F177 G181 V184 Q185 V188 T189 H200 N208 A209 Y212
BS17	CLA	N	H212 P216 N220 W222	H200 P204 N208 W210

Gene Ontology

	Biological Process
GO:0009765	photosynthesis, light harvesting

	Cellular Component
GO:0016020	membrane

View graph for
Biological Process

View graph for
Cellular Component

External links

PDB	RCSB:5xnm, PDBe:5xnm, PDBj:5xnm
PDBsum	5xnm
PubMed	28839073
UniProt	P27490\|CB28_PEA Chlorophyll a-b binding protein 8, chloroplastic (Gene Name=CAB8)

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