Structure of PDB 5xmj Chain N

Receptor sequence
>5xmjN (length=240) Species: 1121448 (Megalodesulfovibrio gigas DSM 1382 = ATCC 19364) [Search protein sequence]
MNRMLTLNIFRYNPLDPDSQPRMQTFTVQEYDSMTLFIALTQIRDEKDPT
LKVDFCCRAGICGSCAMVINGRPGLACHTQTKDLPAEITLHPLPFFQLLG
DLSVDTGSWFRKTGLQIEAWCHSDDKAFDPTADEMRMDNDLANEIFELDR
CIECGCCVAACGTARMRTDFLGAVSIMRVARFYLDPRDKRSEDDYYDVIG
NDQGVFGCMGLLACEDVCPKGIPLQDQLGIMRRMMAMHSV
3D structure
PDB5xmj Structural insights into the electron/proton transfer pathways in the quinol:fumarate reductase from Desulfovibrio gigas.
ChainN
Resolution3.6 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 1.3.5.1: succinate dehydrogenase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 F3S N C161 A173 C208 M209 G210 L211 L212 C214 C161 A173 C208 M209 G210 L211 L212 C214
BS02 SF4 N C151 I152 C154 C157 V174 C218 I222 C151 I152 C154 C157 V174 C218 I222
BS03 FES N C56 C57 R58 G60 I61 C62 C65 L75 C77 C56 C57 R58 G60 I61 C62 C65 L75 C77
Gene Ontology
Molecular Function
GO:0009055 electron transfer activity
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051536 iron-sulfur cluster binding
GO:0051537 2 iron, 2 sulfur cluster binding
GO:0051538 3 iron, 4 sulfur cluster binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0006099 tricarboxylic acid cycle
GO:0009060 aerobic respiration
GO:0022904 respiratory electron transport chain

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:5xmj, PDBe:5xmj, PDBj:5xmj
PDBsum5xmj
PubMed30297797
UniProtT2G9X8

[Back to BioLiP]