Structure of PDB 5mq0 Chain N

Receptor sequence
>5mq0N (length=227) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
EINEPPPNICEQCLGDEANIRMTKIPQGSECKICTLPFTLYHFKTSKRSN
NIIKTLICVRCATQRNICQCCMLDSRWHIPIQLRDHLISLVNEENVMTEE
AKNDMMKRFLSLKNVKLGGAQITSDPSEADNIVDKLKNILLKNPSTKSFF
LYNIDASIPEWKITDTVSQLLLSLIVNHKAKCGGLRFQSSELGERFVSKI
IFIIPWSSTAENIKLSLSLNKLIQLEL
3D structure
PDB5mq0 Structure of a spliceosome remodelled for exon ligation.
ChainN
Resolution4.17 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna N G31 H45 K47 R51 N53 K57 M108 G28 H42 K44 R48 N50 K54 M105
BS02 ZN N C34 C37 C61 C64 C31 C34 C58 C61
BS03 ZN N C13 C16 C71 C74 C10 C13 C68 C71
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0017070 U6 snRNA binding
GO:0036002 pre-mRNA binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0000974 Prp19 complex
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0071006 U2-type catalytic step 1 spliceosome
GO:0071007 U2-type catalytic step 2 spliceosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5mq0, PDBe:5mq0, PDBj:5mq0
PDBsum5mq0
PubMed28076345
UniProtP38241|SLT11_YEAST Pre-mRNA-splicing factor SLT11 (Gene Name=ECM2)

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