Structure of PDB 5lj5 Chain N

Receptor sequence
>5lj5N (length=209) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]
NEPPPNICEQCLGDEANIRMTKIPQGSECKICTLPFTLYHFKTSKRSNNI
IKTLICVRCATQRNICQCCMLDSRWHIPIQLRDHLISLVVMTEEAKNDMM
KRFLSLKNVKLGGAQITSDPSEADNIVDKLKNILLSFFLYNSIPEWKITD
TVSQLLSLIVNHKAKCGGLRFQSSELGERFVSKIFIIPWSTAENIKLSLS
LNKLIQLEL
3D structure
PDB5lj5 Cryo-EM structure of the spliceosome immediately after branching.
ChainN
Resolution10.0 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna N I28 L43 H45 K47 R51 M108 I23 L38 H40 K42 R46 M99
BS02 ZN N C34 C37 C61 C29 C32 C56
BS03 ZN N C13 C16 C71 C74 C8 C11 C66 C69
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0017070 U6 snRNA binding
GO:0036002 pre-mRNA binding
Biological Process
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0000974 Prp19 complex
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0071006 U2-type catalytic step 1 spliceosome
GO:0071007 U2-type catalytic step 2 spliceosome

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5lj5, PDBe:5lj5, PDBj:5lj5
PDBsum5lj5
PubMed27459055
UniProtP38241|SLT11_YEAST Pre-mRNA-splicing factor SLT11 (Gene Name=ECM2)

[Back to BioLiP]