Structure of PDB 4d5l Chain N

Receptor sequence

>4d5lN (length=150) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

GRMHAPGKGLSQSALPYRRSVPTWLKLTSDDVKEQIYKLAKKGLTPSQIG
VILRDSHGVAQVRFVTGNKILRILKSKGLAPDLPEDLYHLIKKAVAVRKH
LERNRKDKDAKFRLILIESRIHRLARYYKTKRVLPPNWKYESSTASALVA

3D structure

PDB

4d5l Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires.

Chain

Resolution

9.0 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	N	G2 R3 M4 A6 P7 K9 G10 L11 S12 Q13 S14 A15 P47 S48 G51 V52 R55 Q62 R64 K70 R73 K76 E86 D87 H90 V98 H101 R104 N105 R106 K107 D108 D110 K112 F113 R114 I116 L117 S120 R124 Y128	G1 R2 M3 A5 P6 K8 G9 L10 S11 Q12 S13 A14 P46 S47 G50 V51 R54 Q61 R63 K69 R72 K75 E85 D86 H89 V97 H100 R103 N104 R105 K106 D107 D109 K111 F112 R113 I115 L116 S119 R123 Y127

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0070181	small ribosomal subunit rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:4d5l, PDBe:4d5l, PDBj:4d5l
PDBsum	4d5l
PubMed	25601755
UniProt	G1SP51\|RS13_RABIT Small ribosomal subunit protein uS15 (Gene Name=RPS13)

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