Structure of PDB 4ayb Chain N

Receptor sequence
>4aybN (length=65) Species: 2286 (Saccharolobus shibatae) [Search protein sequence]
MMIPIRCFTCGSLIADKWQPFITRVNAGENPGKVLDDLGVKRYCCRRMLL
SHIDIISEVIHYTRP
3D structure
PDB4ayb Structural and Functional Analyses of the Interaction of Archaeal RNA Polymerase with DNA.
ChainN
Resolution3.202 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 ZN N C10 C44 C45 C10 C44 C45
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0005737 cytoplasm

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4ayb, PDBe:4ayb, PDBj:4ayb
PDBsum4ayb
PubMed22848102
UniProtB8YB63|RPO10_SACSH DNA-directed RNA polymerase subunit Rpo10 (Gene Name=rpo10)

[Back to BioLiP]