Structure of PDB 3aoh Chain N

Receptor sequence

>3aohN (length=1351) Species: 300852 (Thermus thermophilus HB8)

KKEVRKVRIALASPEKIRSWSYGEVEKPETINYRTLKPERDGLFDERIFG
PIKDYECACGKYKRQRFEGKVCERCGVEVTKSIVRRYRMGHIELATPAAH
IWFVKDVPSKIGTLLDLSATELEQVLYFSKYIVLDPKGAILNGVPVEKRQ
LLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPGVVSRLDG
VALYRFPRRVRVEYEPKDYRVQPHMNVVVPEGARVEAGDKIVAAIDPEEE
VIAEAEGVVHLHEPASILVVKARVYPFEDDVEVSTGDRVAPGDVLADGGK
VKSDVYGRVEVDLVRNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKE
LLEEMKHPSRARRAKARKRLEVVRAFLDSGNRPEWMILEAVPVLPPDLRP
TSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDALLDNGR
RGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDE
VWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAF
NADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDII
LGLYYITQVRKEKKGAGLEFATPEEALAAHERGEVALNAPIKVAGRETSV
GRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIV
AEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKY
YGFTFSTTSGITIGIDDAVIPEEKKQYLEEADRKLLQIEQAYEMGFLTDR
ERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIR
QLCGLRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGGADTAL
RTADSGYLTRKLVDVTHEIVVREADCGTTNYISVPLFQPDEVTRSLRLRK
RADIEAGLYGRVLAREVEVLGVRLEEGRYLSMDDVHLLIKAAEAGEIQEV
PVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAVGIVAAQSIGEPGTQL
TTQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSK
EYKLPKEARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEE
IQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGDSRLLEGQVLEKWDVE
ALNERLIAEGKTPVAWKPLLMGVTKSALSTKSWLSAASFQNTTHVLTEAA
IAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQKTLKAIEEARKE
A

3D structure

• PDB: 3aoh Crystal structure of bacterial RNA polymerase bound with a transcription inhibitor protein
• Chain: N
• Resolution: 4.1 Å

Enzymatic activity

• Enzyme Commision number: 2.7.7.6: DNA-directed RNA polymerase.

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	ZN	N	C1112 C1204	C976 C1068
BS02	MG	N	D741 D743	D605 D607

Gene Ontology

Molecular Function

• GO:0000287 magnesium ion binding
• GO:0003677 DNA binding
• GO:0003899 DNA-directed 5'-3' RNA polymerase activity
• GO:0005515 protein binding
• GO:0008270 zinc ion binding
• GO:0016779 nucleotidyltransferase activity
• GO:0034062 5'-3' RNA polymerase activity
• GO:0046872 metal ion binding

Biological Process

• GO:0006351 DNA-templated transcription

Cellular Component

• GO:0000428 DNA-directed RNA polymerase complex

External links

• PDB: RCSB:3aoh, PDBe:3aoh, PDBj:3aoh
• PDBsum: 3aoh
• PubMed: 21124318
• UniProt: Q8RQE8|RPOC_THET8 DNA-directed RNA polymerase subunit beta' (Gene Name=rpoC)