Structure of PDB 6t83 Chain Ma

Receptor sequence

>6t83Ma (length=169) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

QNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVR
TFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFG
IDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTT
KEDTVSWFKQKYDADVLDK

3D structure

PDB

6t83 Molecular mechanism of translational stalling by inhibitory codon combinations and poly(A) tracts.

Chain

Resolution

4.0 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	Ma	N20 S22 G24 S48 R51 Y52 T56 F57 I59 H68 R94 N95 F96 S97 A98 T99 N101 G103 F104 G105 G124 M125 D126 Y128 K142	N15 S17 G19 S43 R46 Y47 T51 F52 I54 H63 R89 N90 F91 S92 A93 T94 N96 G98 F99 G100 G119 M120 D121 Y123 K137
BS02	rna	Ma	P8 M9 R10 Q43 T44 T70 R72 G135 R137 R140 R141 R143 T147 G149 N150 H152	P3 M4 R5 Q38 T39 T65 R67 G130 R132 R135 R136 R138 T142 G144 N145 H147
BS03	rna	Ma	T53 R55 R61	T48 R50 R56

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6t83, PDBe:6t83, PDBj:6t83
PDBsum	6t83
PubMed	31858614
UniProt	P0C0W9\|RL11A_YEAST Large ribosomal subunit protein uL5A (Gene Name=RPL11A)

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