Structure of PDB 5tgm Chain M1

Receptor sequence

>5tgmM1 (length=169) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

QNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVR
TFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFG
IDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTT
KEDTVSWFKQKYDADVLDK

3D structure

PDB

5tgm Molecular insights into protein synthesis with proline residues.

Chain

Resolution

3.5 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	M1	K16 N20 S22 G24 S48 A50 R51 Y52 V54 F57 H68 R94 N95 S97 N101 G103 F104 G105 G124 D126 Y128 R140 K142	K11 N15 S17 G19 S43 A45 R46 Y47 V49 F52 H63 R89 N90 S92 N96 G98 F99 G100 G119 D121 Y123 R135 K137
BS02	rna	M1	P8 M9 Q43 T44 T70 R72 G135 R137 R140 R141 K142 R143 V148 G149 N150 S151 H152	P3 M4 Q38 T39 T65 R67 G130 R132 R135 R136 K137 R138 V143 G144 N145 S146 H147

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:5tgm, PDBe:5tgm, PDBj:5tgm
PDBsum	5tgm
PubMed	27827794
UniProt	Q3E757\|RL11B_YEAST Large ribosomal subunit protein uL5B (Gene Name=RPL11B)

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