Structure of PDB 9bkd Chain M

Receptor sequence
>9bkdM (length=131) Species: 9606 (Homo sapiens) [Search protein sequence]
GRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIA
GYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPD
TKEMLKLLDFGSLSNLQVTQPTVGMNFKTPR
3D structure
PDB9bkd Human tumor suppressor protein Pdcd4 binds at the mRNA entry channel in the 40S small ribosomal subunit.
ChainM
Resolution2.6 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna M G2 R3 V4 R5 K7 K10 R14 F28 K32 K44 K45 N48 K49 K59 R60 R63 R67 V124 G125 M126 K129 R132 G1 R2 V3 R4 K6 K9 R13 F27 K31 K43 K44 N47 K48 K58 R59 R62 R66 V123 G124 M125 K128 R131
External links
PDB RCSB:9bkd, PDBe:9bkd, PDBj:9bkd
PDBsum9bkd
PubMed39117603
UniProtP08708|RS17_HUMAN Small ribosomal subunit protein eS17 (Gene Name=RPS17)

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