Structure of PDB 9bcu Chain M

Receptor sequence
>9bcuM (length=648) Species: 311400 (Thermococcus kodakarensis) [Search protein sequence]
MIRRETFVDDILKEIREIIVQMVPREAGITDVEFEGPELVIYVKNPEAMM
KDGELIKNLAKVLKKRISVRPDPDILLPPEKAEELIKQLVPPEAEITNIS
FDPSVGEVLIEARKPGLVIGKNGETLRLITQKVHWAPRVVRTPPIQSQTI
YSIRSILQTESKDRRKFLRQVGRNIYRKSEYKSRWIRITGLGGFREVGRS
ALLVQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGLLDAII
ITHAALDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNG
VEPLYRPKDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSSIVHL
HIGNGLHNIAITGDFKFIPTRLFEPAVSRFPRLETLVMESTYGGSNDYQM
PREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIE
VPIYLDGMIWEATAIHTAYPEYLSKHIREQIFHEGYNPFLNPIFKSVANS
RERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAE
GTLGRQVQRGLREIPIVGEDGRTEVINVNMEVHTIDGFSGAADRRELMSY
VARVRPRPERIITVHGEAHKCLDLSSSIHKKFGISTRAPNNLDAIRLK
3D structure
PDB9bcu Structural basis of archaeal FttA-dependent transcription termination
ChainM
Resolution2.2 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna M I56 K64 K65 R66 I67 K114 P115 G116 I119 G120 K121 N122 R141 V325 R326 D327 R333 H351 G355 N358 R382 I56 K64 K65 R66 I67 K114 P115 G116 I119 G120 K121 N122 R141 V325 R326 D327 R333 H351 G355 N358 R382
BS02 ZN M H258 D364 H615 H258 D364 H615
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0004527 exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006353 DNA-templated transcription termination

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Molecular Function
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Biological Process
External links
PDB RCSB:9bcu, PDBe:9bcu, PDBj:9bcu
PDBsum9bcu
PubMed
UniProtQ5JH24|FTTA_THEKO Transcription termination factor FttA (Gene Name=fttA)

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