Structure of PDB 8spo Chain M

Receptor sequence
>8spoM (length=394) Species: 429344 (Maribacter polysiphoniae) [Search protein sequence]
RNKIFISHATPDDNDFTRWLALKLIGLGYEVWCDILFLDKGVDFWSNIEK
VIREDTCKFLLVSSSYSNQREGVLKELAVAAKVKKQLKDDKFIIPLAIDE
QLSYDDINIDIVRLNAIDFKMSWARGLKDILEAFEKQKVPKEVADASKSN
LLYQQIFLHDKSVIEKEEIYDSNWLSILSFPEELRFHEVRELTFPAVRYK
NYLCTFAWAYDTIRIPTEEILSGSYDSNFIRNAECKRLIVQLLNKAFELR
MKDKEVQEYEMSNKTAYWLEKGKLEKDKFEKTMLVGKQKDKNWHFAISGA
SKLYPFPVLMISSHIFFTADGKKLIDSSSVQHSSRRRQGKNWWNNTWRTK
LLAFIKYLSDDDTSFYLEMGSEEKVFVSNEPVKFKGNVSYNIPE
3D structure
PDB8spo Oligomerization-mediated activation of a short prokaryotic Argonaute.
ChainM
Resolution2.98 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna M K211 E260 M287 S288 R362 K200 E234 M261 S262 R336
BS02 dna M R201 R263 N270 H358 K366 R190 R237 N244 H332 K340
BS03 NAD M Y105 L115 N116 A117 Y104 L114 N115 A116
Gene Ontology
Biological Process
GO:0007165 signal transduction

View graph for
Biological Process
External links
PDB RCSB:8spo, PDBe:8spo, PDBj:8spo
PDBsum8spo
PubMed37494956
UniProtA0A316E683

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