Structure of PDB 8ro0 Chain M

Receptor sequence
>8ro0M (length=196) Species: 6239 (Caenorhabditis elegans) [Search protein sequence]
MKDFNQRFRDLHKLRQRARKENHEQVVEEDRRSKLPKNHEAKKERDQWQV
KELQDRKAAEDKGLDYERVRSLEMSADVTEKLEQKRFTSYEDMTLRQHTR
LTAALDPDLDSYKKMRECVGGEQFYPTADTLIHGNHYPTTAAMDKLTKDV
HGQVKRREQYPIDYINEKNKKFNKKLDKYYGKYTEDIKDDLERGTA
3D structure
PDB8ro0 Mechanism for the initiation of spliceosome disassembly.
ChainM
Resolution2.9 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna M R63 K103 F114 Y187 F209 R45 K85 F87 Y160 F172
BS02 rna M N56 R63 R104 Y117 M120 T121 R123 Q124 R127 R183 R184 Y187 K205 N38 R45 R86 Y90 M93 T94 R96 Q97 R100 R156 R157 Y160 K168
External links
PDB RCSB:8ro0, PDBe:8ro0, PDBj:8ro0
PDBsum8ro0
PubMed38925148
UniProtQ09385|SYF2_CAEEL Pre-mRNA-splicing factor syf-2 (Gene Name=syf-2)

[Back to BioLiP]