Structure of PDB 8red Chain M

Receptor sequence
>8redM (length=329) Species: 571 (Klebsiella oxytoca) [Search protein sequence]
GTPSGNGVDQGETTQSLQDYLMWQVELTPFTDTDRAIATSIVDAVDDTGY
LTIQIEDIVDSIGDDEIGLEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQL
SQFAKETPWLEEARLIISDHLDLLANHDFRTLMRVTRLKEEVLKEAVNLI
QSLDPRPGQSIQTGEPEYVIPDVLVRKVNDRWVVELNSSLESANDTLLRV
SRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSP
RGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLT
SMLSEQGIMVARRTVAKYRESLSIPPSNQ
3D structure
PDB8red Structural basis of sigma 54 displacement and promoter escape in bacterial transcription.
ChainM
Resolution3.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna M V366 L367 S382 R383 S405 R455 N471 Q472 V223 L224 S239 R240 S262 R312 N328 Q329
BS02 dna M D103 S291 L333 A336 M376 T380 H406 T409 R456 K460 D9 S188 L190 A193 M233 T237 H263 T266 R313 K317
Gene Ontology
Molecular Function
GO:0001216 DNA-binding transcription activator activity
GO:0016987 sigma factor activity

View graph for
Molecular Function
External links
PDB RCSB:8red, PDBe:8red, PDBj:8red
PDBsum8red
PubMed38170755
UniProtP06223|RP54_KLEOX RNA polymerase sigma-54 factor (Gene Name=rpoN)

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