Structure of PDB 8qk7 Chain M

Receptor sequence

>8qk7M (length=136) Species: 562 (Escherichia coli) [Search protein sequence]

MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTARQIEAAR
RAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGK
VLYEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM

3D structure

PDB

8qk7 The compensatory mechanism of a naturally evolved E167K RF2 counteracting the loss of RF1 in bacteria

Chain

Resolution

2.77 Å

3D
structure

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	M	K5 R6 K8 F9 R10 K11 M12 H13 K14 G15 R16 Q22 G23 F28 R40 R44 Q45 A48 R55 K62 W64 R66 F68 D70 E75 K76 X81 X82 G83 K84 G85 K86 K100 A122 K123 P125 K127	K5 R6 K8 F9 R10 K11 M12 H13 K14 G15 R16 Q22 G23 F28 R40 R44 Q45 A48 R55 K62 W64 R66 F68 D70 E75 K76 X81 X82 G83 K84 G85 K86 K100 A122 K123 P125 K127
BS02	rna	M	R16 N17 R18 G19 R38	R16 N17 R18 G19 R38

External links

PDB	RCSB:8qk7, PDBe:8qk7, PDBj:8qk7
PDBsum	8qk7
PubMed
UniProt	P0ADY7\|RL16_ECOLI Large ribosomal subunit protein uL16 (Gene Name=rplP)