Structure of PDB 8f1i Chain M

Receptor sequence
>8f1iM (length=405) Species: 562 (Escherichia coli) [Search protein sequence]
QLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDYQGETTQTLQ
DYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLEDILESIGDEEID
IDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIIS
DHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEY
VIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRS
NLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIA
QAVEMHESTISRVTTQKYLHSPRGIFELKYFFSSHVNTEGGGEASSTAIR
ALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSN
QRKQL
3D structure
PDB8f1i A general mechanism for transcription bubble nucleation in bacteria.
ChainM
Resolution3.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Gene Ontology
Molecular Function
GO:0000976 transcription cis-regulatory region binding
GO:0001216 DNA-binding transcription activator activity
GO:0003677 DNA binding
GO:0016779 nucleotidyltransferase activity
GO:0016987 sigma factor activity
Biological Process
GO:0006352 DNA-templated transcription initiation
GO:0006355 regulation of DNA-templated transcription
GO:0006525 arginine metabolic process
GO:0042128 nitrate assimilation
GO:0045893 positive regulation of DNA-templated transcription
GO:0048870 cell motility
GO:0090605 submerged biofilm formation
GO:2000142 regulation of DNA-templated transcription initiation
Cellular Component
GO:0000345 cytosolic DNA-directed RNA polymerase complex
GO:0000428 DNA-directed RNA polymerase complex
GO:0032993 protein-DNA complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8f1i, PDBe:8f1i, PDBj:8f1i
PDBsum8f1i
PubMed36972428
UniProtP24255|RP54_ECOLI RNA polymerase sigma-54 factor (Gene Name=rpoN)

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