Structure of PDB 7yi5 Chain M

Receptor sequence
>7yi5M (length=107) Species: 8355 (Xenopus laevis) [Search protein sequence]
AKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAE
ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNI
QSVLLPK
3D structure
PDB7yi5 Diverse modes of H3K36me3-guided nucleosomal deacetylation by Rpd3S.
ChainM
Resolution3.96 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna M R29 R35 R42 V43 A45 K75 T76 R77 R18 R24 R31 V32 A34 K64 T65 R66
BS02 dna M A14 K15 R17 R20 R32 R42 R77 A3 K4 R6 R9 R21 R31 R66
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0030527 structural constituent of chromatin
GO:0046982 protein heterodimerization activity
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus
GO:0005694 chromosome

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Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:7yi5, PDBe:7yi5, PDBj:7yi5
PDBsum7yi5
PubMed37468628
UniProtP06897|H2A1_XENLA Histone H2A type 1

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