Structure of PDB 7syh Chain M

Receptor sequence

>7syhM (length=151) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

DIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIE
GTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRF
EKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKAAGTK
K

3D structure

PDB

7syh Molecular architecture of 40S initiation complexes on the Hepatitis C virus IRES: from ribosomal attachment to eIF5B-mediated reorientation of initiator tRNA

Chain

Resolution

4.6 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	M	E7 A9 F17 Y36 N39 I40 L42 K58 K59 G64 N65 I68 R69 R71 K79 M82 Q83 Y92 R97 K98 Y99 K104 R105 H106 K107 N108 E130 R132 P133 L134 S135 K136 R139 F140 A149 K152	E5 A7 F15 Y34 N37 I38 L40 K56 K57 G62 N63 I66 R67 R69 K77 M80 Q81 Y90 R95 K96 Y97 K102 R103 H104 K105 N106 E128 R130 P131 L132 S133 K134 R137 F138 A147 K150

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005730	nucleolus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022626	cytosolic ribosome
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Cellular Component

External links

PDB	RCSB:7syh, PDBe:7syh, PDBj:7syh
PDBsum	7syh
PubMed
UniProt	G1TRM4\|RS11_RABIT Small ribosomal subunit protein uS17 (Gene Name=RPS11)

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